OtherΒΆ
Microorganism |
Code |
Library |
Type |
Value |
Selected |
|---|---|---|---|---|---|
Acremonium |
63996006 |
SNOMED |
fungi |
1 |
1 |
Adenoviridae |
424470006 |
SNOMED |
virus |
2 |
1 |
Ancylostoma duodenale |
81559006 |
SNOMED |
parasite, helminth |
3 |
1 |
Andes orthohantavirus |
442001008 |
SNOMED |
virus |
4 |
1 |
Arenaviridae |
243624009 |
SNOMED |
virus |
5 |
1 |
Ascaris lumbricoides |
19061001 |
SNOMED |
parasite, helminth |
6 |
1 |
Aspergillus |
2429008 |
SNOMED |
fungi |
7 |
1 |
Aspergillus flavus |
66821001 |
SNOMED |
fungi |
8 |
1 |
Aspergillus fumigatus |
32684000 |
SNOMED |
fungi |
9 |
1 |
Aspergillus fumigatus complex |
719029007 |
SNOMED |
fungi |
10 |
1 |
Aspergillus niger |
89354002 |
SNOMED |
fungi |
11 |
1 |
Aspergillus terreus |
26406003 |
SNOMED |
fungi |
12 |
1 |
Aspergillus versicolor |
48315007 |
SNOMED |
fungi |
13 |
1 |
Astroviridae |
424055004 |
SNOMED |
virus |
14 |
1 |
Avian Influenza A H5N1 |
772827006 |
SNOMED |
virus |
15 |
1 |
Avian Influenza A H7N9 |
609444009 |
SNOMED |
virus |
16 |
1 |
Blastocystis hominis |
28923009 |
SNOMED |
parasite, Stramenopiles |
17 |
1 |
Blastomyces dermatitidis |
65615007 |
SNOMED |
fungi |
18 |
1 |
Bocavirus (Genus) |
430902006 |
SNOMED |
virus |
19 |
1 |
Brugia malayi |
112443002 |
SNOMED |
parasite, helminth |
20 |
1 |
Bunyaviridae (Family) |
243615000 |
SNOMED |
virus |
21 |
1 |
Caliciviridae (Family) |
243627002 |
SNOMED |
virus |
22 |
1 |
Candida |
3265006 |
SNOMED |
fungi |
23 |
1 |
Candida albicans |
53326005 |
SNOMED |
fungi |
24 |
1 |
Candida auris |
3490000000000 |
SNOMED |
fungi |
25 |
1 |
Candida dubliniensis |
115952006 |
SNOMED |
fungi |
26 |
1 |
Candida glabrata |
444877006 |
SNOMED |
fungi |
27 |
1 |
Candida inconspicua |
283871001 |
SNOMED |
fungi |
28 |
1 |
Candida orthopsilosis |
3690000000000 |
SNOMED |
fungi |
29 |
1 |
Candida parapsilosis |
61302002 |
SNOMED |
fungi |
30 |
1 |
Candida tropicalis |
47885008 |
SNOMED |
fungi |
31 |
1 |
Clavispora lusitaniae |
50164000 |
SNOMED |
fungi |
32 |
1 |
Clonorchis sinensis |
36559008 |
SNOMED |
parasite, helminth |
33 |
1 |
Coccidioides |
8672004 |
SNOMED |
fungi |
34 |
1 |
Coccidioides immitis |
23439005 |
SNOMED |
fungi |
35 |
1 |
Coronaviridae (Family) |
243607003 |
SNOMED |
virus |
36 |
1 |
Crimean-Congo Hemorrhagic Fever virus (CCHF) |
79875007 |
SNOMED |
virus |
37 |
1 |
Cryptococcus gattii |
450862004 |
SNOMED |
fungi |
38 |
1 |
Cryptococcus neoformans |
67168003 |
SNOMED |
fungi |
39 |
1 |
Cryptosporidium |
83821001 |
SNOMED |
parasite, protozoa |
40 |
1 |
Cryptosporidium hominis |
417722006 |
SNOMED |
parasite, protozoa |
41 |
1 |
Cryptosporidium parvum |
51504002 |
SNOMED |
parasite, protozoa |
42 |
1 |
Curvularia lunata |
33165007 |
SNOMED |
fungi |
43 |
1 |
Cyclospora |
103560006 |
SNOMED |
parasite, protozoa |
44 |
1 |
Cyclospora cayetanensis |
103561005 |
SNOMED |
parasite, protozoa |
45 |
1 |
Cytomegalovirus |
407444007 |
SNOMED |
virus |
46 |
1 |
Deltavirus |
83617006 |
SNOMED |
virus |
47 |
1 |
Dengue virus |
34348001 |
SNOMED |
virus |
48 |
1 |
Diphyllobothrium latum |
40406002 |
SNOMED |
parasite, helminth |
49 |
1 |
Dracunculus medinensis |
3824001 |
SNOMED |
parasite, helminth |
50 |
1 |
Ebola virus |
424206003 |
SNOMED |
virus |
51 |
1 |
Echinococcus granulosus |
243672005 |
SNOMED |
parasite, helminth |
52 |
1 |
Entamoeba |
38324000 |
SNOMED |
parasite, protozoa |
53 |
1 |
Entamoeba dispar |
415987008 |
SNOMED |
parasite, protozoa |
54 |
1 |
Entamoeba histolytica |
4716008 |
SNOMED |
parasite, protozoa |
55 |
1 |
Enterobius vermicularis |
55008000 |
SNOMED |
parasite, helminth |
56 |
1 |
Enterovirus (genus Enterovirus) |
243633006 |
SNOMED |
virus |
57 |
1 |
Epidermophyton |
112403007 |
SNOMED |
fungi |
58 |
1 |
Exophiala dermatitidis |
20586007 |
SNOMED |
fungi |
59 |
1 |
Falciformispora senegalensis (formerly Leptosphaeria senegalensis) |
48529007 |
SNOMED |
fungi |
60 |
1 |
Filoviridae (Family) |
407325004 |
SNOMED |
virus |
61 |
1 |
Flaviviridae (Family) |
243602009 |
SNOMED |
virus |
62 |
1 |
Fungi |
414561005 |
SNOMED |
fungi |
63 |
1 |
Fusarium |
35238009 |
SNOMED |
fungi |
64 |
1 |
Genus Marburgvirus |
424421007 |
SNOMED |
virus |
65 |
1 |
Giardia |
61419001 |
SNOMED |
parasite, protozoa |
66 |
1 |
Giardia intestinalis |
78181009 |
SNOMED |
parasite, protozoa |
67 |
1 |
Giardia lamblia |
78181009 |
SNOMED |
parasite, protozoa |
68 |
1 |
Hantavirus |
49445003 |
SNOMED |
virus |
69 |
1 |
Hendra virus |
115510008 |
SNOMED |
virus |
70 |
1 |
Hepadnaviridae |
422951006 |
SNOMED |
virus |
71 |
1 |
Hepatitis A virus |
32452004 |
SNOMED |
virus |
72 |
1 |
Hepatitis B virus |
81665004 |
SNOMED |
virus |
73 |
1 |
Hepatitis C virus |
62944002 |
SNOMED |
virus |
74 |
1 |
Hepatitis D |
83617006 |
SNOMED |
virus |
75 |
1 |
Hepatitis E virus |
78475006 |
SNOMED |
virus |
76 |
1 |
Herpesviridae |
128377001 |
SNOMED |
virus |
77 |
1 |
Histoplasma |
81951003 |
SNOMED |
fungi |
78 |
1 |
Histoplasma capsulatum |
56596006 |
SNOMED |
fungi |
79 |
1 |
Human Herpesvirus 1 (HHV1, Herpes simplex virus 1, HSV1) |
407451003 |
SNOMED |
virus |
80 |
1 |
Human Herpesvirus 2 (HHV2, Herpes Simplex virus 2, HSV2) |
407450002 |
SNOMED |
virus |
81 |
1 |
Human Herpesvirus 3 (Varicella-zoster virus, VZV) |
19551004 |
SNOMED |
virus |
82 |
1 |
Human Herpesvirus 4 (Epstein-Barr virus, EBV) |
40168006 |
SNOMED |
virus |
83 |
1 |
Human Herpesvirus 5 (Cytomegalovirus humanbeta5, hCMV) |
243579005 |
SNOMED |
virus |
84 |
1 |
Human Herpesvirus 6 (Roseola infantum virus) |
103528003 |
SNOMED |
virus |
85 |
1 |
Human Immunodeficiency Virus (HIV) |
19030005 |
SNOMED |
virus |
86 |
1 |
Human Immunodeficiency virus type 1 (HIV-1) |
89293008 |
SNOMED |
virus |
87 |
1 |
Human Immunodeficiency virus type 2 (HIV-2) |
36115006 |
SNOMED |
virus |
89 |
1 |
Human Metapneumovirus (hMPV) |
416730002 |
SNOMED |
virus |
90 |
1 |
Human Parainfluenza virus |
407498006 |
SNOMED |
virus |
91 |
1 |
Human Parainfluenza virus 1 |
407489008 |
SNOMED |
virus |
92 |
1 |
Human Parainfluenza virus 2 |
407491000 |
SNOMED |
virus |
93 |
1 |
Human Parainfluenza virus 3 |
407493002 |
SNOMED |
virus |
94 |
1 |
Human Parainfluenza virus 4 |
89117003 |
SNOMED |
virus |
95 |
1 |
Human Parvovirus b19 |
63603005 |
SNOMED |
virus |
96 |
1 |
Human Respiratory Syncytial virus (RSV) |
6415009 |
SNOMED |
virus |
97 |
1 |
Human bocavirus |
446373002 |
SNOMED |
virus |
98 |
1 |
Human coronavirus |
84101006 |
SNOMED |
virus |
100 |
1 |
Hymenolepis diminuta |
23895005 |
SNOMED |
parasite, helminth |
101 |
1 |
Hymenolepis nana |
74311004 |
SNOMED |
parasite, helminth |
102 |
1 |
Influenza A subtype H5N8 |
708527000 |
SNOMED |
virus |
103 |
1 |
Influenza A suptype H7N7 |
715346008 |
SNOMED |
virus |
104 |
1 |
Influenza A virus |
407479009 |
SNOMED |
virus |
105 |
1 |
Influenza A virus subtype H1N1 |
442352004 |
SNOMED |
virus |
106 |
1 |
Influenza A virus subtype H5N1 |
772827006 |
SNOMED |
virus |
107 |
1 |
Influenza A virus subtype H7N9 |
609444009 |
SNOMED |
virus |
108 |
1 |
Influenza B virus |
407480007 |
SNOMED |
virus |
109 |
1 |
Influenza virus |
725894000 |
SNOMED |
virus |
110 |
1 |
Isospora belli |
12633005 |
SNOMED |
parasite, protozoa |
111 |
1 |
Japanese encephalitis virus (JEV) |
243603004 |
SNOMED |
virus |
112 |
1 |
Junin virus |
26352009 |
SNOMED |
virus |
113 |
1 |
Lassa virus |
85944001 |
SNOMED |
virus |
114 |
1 |
Leishmania |
79357004 |
SNOMED |
parasite, protozoa |
115 |
1 |
Leishmania Viannia |
712933004 |
SNOMED |
parasite, protozoa |
116 |
1 |
Leishmania braziliensis |
83196002 |
SNOMED |
parasite, protozoa |
117 |
1 |
Leishmania braziliensis complex |
7400004 |
SNOMED |
parasite, protozoa |
118 |
1 |
Leishmania donovani complex |
79781008 |
SNOMED |
parasite, protozoa |
119 |
1 |
Lichthiemia |
734206002 |
SNOMED |
fungi |
120 |
1 |
Lomentospora prolificans (Scedosporium prlificans) |
69564000 |
SNOMED |
fungi |
121 |
1 |
Lujo virus |
450622000 |
SNOMED |
virus |
122 |
1 |
Lymphocytic choriomeningitis virus (LCMV) |
82518003 |
SNOMED |
virus |
123 |
1 |
MERS-CoV |
697932005 |
SNOMED |
virus |
124 |
1 |
Machupo virus |
71489006 |
SNOMED |
virus |
125 |
1 |
Madurella |
23009007 |
SNOMED |
fungi |
126 |
1 |
Malassezia pachydermatis |
51257000 |
SNOMED |
fungi |
127 |
1 |
Measles morbillivirus |
52584002 |
SNOMED |
virus |
128 |
1 |
Metapneumovirus |
407501006 |
SNOMED |
virus |
129 |
1 |
Meyerozyma guilliermondii |
29812000 |
SNOMED |
fungi |
130 |
1 |
Microsporidia |
418382009 |
SNOMED |
parasite, protozoa |
131 |
1 |
Microsporum |
11983001 |
SNOMED |
fungi |
132 |
1 |
Middle East Respiratory Syndrome Coronavirus |
697932005 |
SNOMED |
virus |
133 |
1 |
Mpox virus |
59774002 |
SNOMED |
virus |
134 |
1 |
Mucor |
49782006 |
SNOMED |
fungi |
135 |
1 |
Mumps virus |
50384007 |
SNOMED |
virus |
136 |
1 |
Necator americanus |
43905006 |
SNOMED |
parasite, helminth |
137 |
1 |
Neotestudina rosatii (Zopfia rosatii) |
47066009 |
SNOMED |
fungi |
138 |
1 |
Nipah virus |
115511007 |
SNOMED |
virus |
139 |
1 |
Norovirus |
407359000 |
SNOMED |
virus |
140 |
1 |
Onchocerca volvulus |
52397001 |
SNOMED |
parasite, helminth |
141 |
1 |
Orthomyxoviridae (influenza viruses) |
55014007 |
SNOMED |
virus |
142 |
1 |
Papillomavirus |
243584004 |
SNOMED |
virus |
143 |
1 |
Papoviridae |
243587006 |
SNOMED |
virus |
144 |
1 |
Paracoccidioides |
112405000 |
SNOMED |
fungi |
145 |
1 |
Paragonimus westermani |
58412002 |
SNOMED |
parasite, helminth |
146 |
1 |
Paramyxoviridae |
128354001 |
SNOMED |
virus |
147 |
1 |
Parvoviridae |
243587006 |
SNOMED |
virus |
148 |
1 |
Penicillium |
42993004 |
SNOMED |
fungi |
149 |
1 |
Pichia kudriavzeveii |
16452009 |
SNOMED |
fungi |
150 |
1 |
Picornaviridae |
407344006 |
SNOMED |
virus |
151 |
1 |
Plasmodium |
34706006 |
SNOMED |
parasite, protozoa |
152 |
1 |
Plasmodium falciparum |
30020004 |
SNOMED |
parasite, protozoa |
153 |
1 |
Plasmodium malariae |
56395006 |
SNOMED |
parasite, protozoa |
154 |
1 |
Plasmodium ovale |
18508006 |
SNOMED |
parasite, protozoa |
155 |
1 |
Plasmodium vivax |
74746009 |
SNOMED |
parasite, protozoa |
156 |
1 |
Pneumocystis |
115987006 |
SNOMED |
fungi |
157 |
1 |
Pneumocystis jirovecii |
79909001 |
SNOMED |
fungi |
158 |
1 |
Prion diseases |
20484008 |
SNOMED |
Prions |
159 |
1 |
Rabies virus |
59881000 |
SNOMED |
virus |
160 |
1 |
Respiratory Syncytial Virus (RSV) |
6415009 |
SNOMED |
virus |
161 |
1 |
Retroviridae |
77622001 |
SNOMED |
virus |
162 |
1 |
Rhabdoviridae |
407326003 |
SNOMED |
virus |
163 |
1 |
Rhizomucor |
85711000 |
SNOMED |
fungi |
164 |
1 |
Rhizopus |
17683005 |
SNOMED |
fungi |
165 |
1 |
Rift Valley fever virus |
28335002 |
SNOMED |
virus |
166 |
1 |
Ross River virus |
32458000 |
SNOMED |
virus |
167 |
1 |
Rotavirus |
417542000 |
SNOMED |
virus |
168 |
1 |
Rubella virus |
5210005 |
SNOMED |
virus |
169 |
1 |
SARS-CoV-2 |
840533007 |
SNOMED |
virus |
170 |
1 |
SARS-CoV-2 Beta - B.1.351 |
virus |
171 |
1 |
||
SARS-CoV-2 Delta - B.1.617.2 |
virus |
172 |
1 |
||
SARS-CoV-2 Eta - B.1.525 |
virus |
173 |
1 |
||
SARS-CoV-2 Gamma - P.1 |
virus |
174 |
1 |
||
SARS-CoV-2 Iota - B.1.526 |
virus |
175 |
1 |
||
SARS-CoV-2 Kappa - B.1.617.1 |
virus |
176 |
1 |
||
SARS-CoV-2 Omicron |
virus |
177 |
1 |
||
SARS-CoV-2 Omicron - B.1.1.529 |
virus |
178 |
1 |
||
SARS-CoV-2 Omicron - B.1.1.529.2 BA.2 |
virus |
179 |
1 |
||
SARS-CoV-2 Omicron - B.1.1.529.5 BA.5 |
virus |
180 |
1 |
||
SARS-CoV-2 Theta- P.3 |
virus |
181 |
1 |
||
SARS-CoV-2 Zeta - P.2 |
virus |
182 |
1 |
||
SARS-CoV-2 Alpha - B.1.1.7 |
virus |
183 |
1 |
||
SARS-CoV-2 Antigen |
840536004 |
SNOMED |
virus (substance) |
184 |
1 |
SARS-CoV-2 IgG Antibody |
63000000000000 |
SNOMED |
virus (substance) |
185 |
1 |
SARS-CoV-2 IgG/IgM Antibody |
840535000 |
SNOMED |
virus (substance) |
186 |
1 |
SARS-CoV-2 IgM Antibody |
50600000000000 |
SNOMED |
virus (substance) |
187 |
1 |
Saccharomyces cerevisiae |
765320007 |
SNOMED |
fungi |
188 |
1 |
Sapovirus |
407362002 |
SNOMED |
virus |
189 |
1 |
Scedosporium |
31901009 |
SNOMED |
fungi |
190 |
1 |
Schistosoma |
53583001 |
SNOMED |
parasite, helminth |
191 |
1 |
Schistosoma guineensis |
parasite, helminth |
192 |
1 |
||
Schistosoma haematobium |
3294004 |
SNOMED |
parasite, helminth |
193 |
1 |
Schistosoma intercalatum |
15685002 |
SNOMED |
parasite, helminth |
194 |
1 |
Schistosoma japonicum |
5249008 |
SNOMED |
parasite, helminth |
195 |
1 |
Schistosoma mansoni |
11168007 |
SNOMED |
parasite, helminth |
196 |
1 |
Schistosoma mekongi |
75475007 |
SNOMED |
parasite, helminth |
197 |
1 |
Severe Acute Respiratory Syndrome Coronavirus 2 |
1240000000000000 |
SNOMED |
virus |
198 |
1 |
Severe Acute Respiratory Syndrome-Related Coronavirus |
415360003 |
SNOMED |
virus |
199 |
1 |
Severe fever with thrombocytopaenia syndrome (SFTS) |
722401001 |
SNOMED |
virus |
200 |
1 |
Simplexvirus (Genus) |
314797000 |
SNOMED |
virus |
201 |
1 |
Sporothrix schenckii |
32662000 |
SNOMED |
fungi |
202 |
1 |
Strongyloides stercoralis |
42625000 |
SNOMED |
parasite, helminth |
203 |
1 |
Taenia saginata |
61085008 |
SNOMED |
parasite, helminth |
204 |
1 |
Taenia solium |
17966003 |
SNOMED |
parasite, helminth |
205 |
1 |
Talaromyces marneffei |
71825007 |
SNOMED |
fungi |
206 |
1 |
Togoviridae |
129231002 |
SNOMED |
virus |
207 |
1 |
Toxocara canis |
88857009 |
SNOMED |
parasite, helminth |
208 |
1 |
Toxoplasma |
61949005 |
SNOMED |
parasite, protozoa |
209 |
1 |
Toxoplasma gondii |
4649006 |
SNOMED |
parasite, protozoa |
210 |
1 |
Trichinella spiralis |
16439004 |
SNOMED |
parasite, helminth |
211 |
1 |
Trichomonas |
3764006 |
SNOMED |
parasite, protozoa |
212 |
1 |
Trichomonas vaginalis |
22417000 |
SNOMED |
parasite, protozoa |
213 |
1 |
Trichophyton |
88578003 |
SNOMED |
fungi |
214 |
1 |
Trichosporon asahii |
243475001 |
SNOMED |
fungi |
215 |
1 |
Trichuris trichiura |
5378007 |
SNOMED |
parasite, helminth |
216 |
1 |
Trypanosoma |
40740003 |
SNOMED |
parasite, protozoa |
217 |
1 |
Trypanosoma brucei gambiense |
20027006 |
SNOMED |
parasite, protozoa |
218 |
1 |
Trypanosoma brucei rhodesiense |
79513002 |
SNOMED |
parasite, protozoa |
219 |
1 |
Trypanosoma cruzi |
88274000 |
SNOMED |
parasite, protozoa |
220 |
1 |
West Nile virus |
57311007 |
SNOMED |
virus |
221 |
1 |
Wuchereria bancrofti |
84925004 |
SNOMED |
parasite, helminth |
222 |
1 |
Yeast |
62093005 |
SNOMED |
fungi |
223 |
1 |
Zika virus |
50471002 |
SNOMED |
virus |
224 |
1 |